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RADIOISOTOPE METHODS



THREE TYPES OF RADIOACTIVE DECAY
There are three main types of radiation:
o                Alpha radiation
o                Beta radiation
o                Gamma radiation

Alpha Decay
The reason alpha decay occurs is because the nucleus has too many protons which cause excessive repulsion. In an attempt to reduce the repulsion, a Helium nucleus is emitted. The way it works is that the Helium nuclei are in constant collision with the walls of the nucleus and because of its energy and mass, there exists a non zero probability of transmission. That is, an alpha particle (Helium nucleus) will tunnel out of the nucleus.

Properties of Alpha Radiation
·                α-particles are no particularly dangerous unless they are swallowed or breathed in.
·                since  α radiations cannot pass through clothing.
·                But cells they are very damaging.


Alpha Decay of Americium-241 to Neptunium-237

Beta Decay
Beta decay occurs when the neutron to proton ratio is too great in the nucleus and causes instability. In basic beta decay, a neutron is turned into a proton and an electron. The electron is then emitted. Here's a diagram of beta decay with hydrogen-3:


Alpha Decay of Hydrogen-3 to Helium-3. 

There is also positron emission when the neutron to proton ratio is too small. A proton turns into a neutron and a positron and the postiron is emitted. A positron is basically a positively charged electron. Here's a diagram of positron emission with carbon-11:


Positron Decay of Carbon-11 to Boron-11. 
The final type of beta decay is known as electron capture and also occurs when the neutron to proton ratio in the nucleus is too small. The nucleus captures an electron which basically turns a proton into a neutron. Here's a diagram of electron capture with beryllium-7:


Electron Capture of Beryllium-7. 

Properties of Beta Radiations
·                Beta radiations have much greater range.
·                Hard beta could pass through a few centimeter of lead and have considerable range in air.
·                So beta emissions can produce dangerous radiation even at distances from the source.

Gamma Decay
Gamma decay occurs because the nucleus is at too high an energy. The nucleus falls down to a lower energy state and, in the process, emits a high energy photon known as a gamma particle. Here's a diagram of gamma decay with helium-3:
Properties of Gamma Radiations
·                Gamma radiations are the most penetrating of all and can pass through many metres of even concrete.
·                Since their ionizing power is the least of all and many will go through the body without effect.
Gamma Decay of Helium-3




HALF LIFE AND RADIOACTIVITY

Atoms
An atom is smallest particle of an element capable of entering into a chemical reaction. It consists of a nucleus and orbital electrons. The Nucleus which contains neutrons and protons, small, central, positively charged region of an atom that carries essentially all the mass. Except for the nucleus of ordinary (light) hydrogen, which has a single proton, all atomic nuclei contain both protons and neutrons.

The number of protons determines the total positive charge, or atomic number; this is the same for all the atomic nuclei of a given chemical element. The total number of neutrons and protons is called the mass number.

A nuclide is a species of atom characterized by its mass number, atomic number, and energy state of its nucleus, provided that the atom is capable of existing for a measurable time.

Isotopes
Isotopes are nuclides having the same number of protons (same atomic number) in their nuclei, but differing in the number of neutrons (different mass number). Isotopes of a particular element exhibit almost identical chemical properties.

Radioisotopes
 A radioisotope is an atom with an unstable ratio of neutrons to protons in its nucleus. In an attempt to reorganize to a more stable state, it may undergo various types of rearrangement that involve the release of radiation. A radioisotope is a radioactive material. Radioactive material is any material that emits radiation spontaneously. Radioisotopes provide an easily traced “label” in various chemical compounds. Radioactive decay is the disintegration or transformation of the nucleus of an unstable nuclide by the spontaneous emission of charged particles and photons.

Units of Radioactivity
The curie is the quantity of any radioactive material in which the number of nuclear transformations is 3.7 x 1010 per second. The unit is abbreviated Ci. The becquerel is the international (SI) unit for radioactivity. One becquerel is equal to one nuclear transformation per second. A becquerel is about 2.7 x 10-11 curies. Common metric prefixes are used to denote multiples of the curie and the becquerel. A thousandth of a curie is known as a millicurie (mCi). A millionth of a curie is known as a microcurie (µCi). A microcurie is 3.7 x 104 or 37 kilobecquerels.

Radioactivity and Half life

          Radioactive materials have an associated half-life, or decay time characteristic of that isotope. As radiation is emitted, the material becomes less radioactive over time, decaying exponentially. Since it is impossible or impractical to measure how long one atom takes to decay, the amount of time it takes for half of the total amount of radioactive material to decay is used to calculate half-life. Some radioisotopes have long half-lives; for example, Carbon-14 takes 5,730 years for any given quantity to decay to half of the original amount of radioactivity. Other radioactive materials have short half-lives; Phosphorus-32 has an approximately two-week half-life, and Technetium-99m (used in human and animal nuclear medicine diagnostic procedures) has a half-life of 6 hours. Half-life is important for many reasons. When deposited in the human body, the half-life of the radioactive material present in the body affects the amount of the exposure. Materials with shorter half-lives typically cause less dose for a given activity than materials with longer half-lives. If the radioactive material contaminates a workbench or equipment, and is not removable, the amount of time before the contaminated items may be used again is determined by the radioactive half-life. Radioisotope decay (using shorter half-life isotopes) helps to minimize costs in radioactive waste management.
The equation used to calculate radioactive decay is shown below.
A = A0 e-λt
Where:
A = Current amount of radioactivity
A0 = Original amount of radioactivity
e = base natural log (approximately 2.718)
λ = decay constant = 0.693/t1/2 (where t1/2 = half-life)
t = the amount of time elapsed from A0 to A

Half life

The radioctive isotopes are characterized by their half life. The decay of radioisotopes is irreversible and is independent of any physical parameters such as temperature and pressure. The rate of decay always follows the exponential law. That is, the number of atoms disintegrating at any given time is directly proportional to the total number of atoms present at that time.

Half life (T1/2) is the time required for the radioactivity to be reduced to one half of its original value. This is also known as physical half life (Tp)

(T1/2)  =  0.693/λ
Where λ is radioactive decay constant

Biological half life (Tb)

Biological half life is defined as the normal amount of time required for the turnover of one half of the body content of a given radioactive or non radioactive element.

Effective half life (Te)

When radioactive isotopes are used in in vivo experiments, the turnover rate of the element in the body must also be considered. Therefore the rate of decay of radioactivity will be a function of both radioactive decay and metabolic turnover which is known as effective half life and denoted as Te.
                             Effective half life (Te)   =   (Tb) x  (Tp)  /  (Tb)  +  (Tp)  



GEIGER-MULLER COUNTER (GM COUNTER)
The radioactivity of isotopes can be measured either by using counting devices or by photographic method (autoradiography). The quantity determination of radioactivity is based on the ionization or excitation of matter induced by radiations emanated from radioactive elements. GM counter is an important instruments used to determine radioactivity of substances.

This instrument works on the principle of ionization of gases & is suitable for all kinds of radiations. The basic advantage of GM counter is derived from the amplification (each primary ion pair yields close to 100 million secondary ion pairs). The amplification is so great that an extremely simple external electronic amplifier is sufficient. This simplicity imparts stability to GM counter.

It consists of a simple & very compact ionization chamber made of glass with two electrodes. It is filled with a gas usually argon, neon or air.The outer electrode (cathode) is a metal tube formed by brass or nickel with 1-5 cm diameter & 10-50 cm length.The inner electrode (anode) is a fine wire of tungsten with 0.1-0.5 mm thickness. The anode is stretched along the axis of the tube & well-insulated by ebonite plugs. When radiation enters the tube, the gas is ionized rapidly under a high voltage power supply resulting in an electric pulse. But, the discharge of the pulse terminates when large quantity of positive ions get collected around the negative electrode & this prevents the occurrence of further ionization.

To accelerate the process of ionization, GM tubes contain a quenching gas. However, presence of a quenching gas & the window through which the particles pass into the tube restrict sthe entrance of radiation thereby reducing the efficiency of the detector. To overcome this problem, GM tubes with very thin windows or with no windows have been developed. But the windowless GM tubes require a continuous flow of special quenching gas through the tube.


Counter Tubes
The choice of counter tubes to be used depends on the nature of the sample to be counted (whether the sample is solid or liquid, whether it is soft or high energy β-emitter etc.)

Proportional Counter
It is a modified GM tube which operates in a region of applied current where the charge produced is proportional to the initial ionization. This device is more advantageous than GM counter because it has greater stability & reproducibility & can operate at reduced voltage.
The consumption of quenching gas is lesser in proportional counter than in GM tube. This device produces continuous pulses which enable very fast counting. The most popular proportional counter is the ‘flow counter‘ in which a gas like argon or indane is continuously.

Optimum voltage
          The GM counter should be operated only in the voltage region known as “Geiger – Muller region”. It is the voltage range where a small increase or decrease in voltage does not affect the counting rate. When the applied voltage is plotted against cout rate, the first region is known as “recombination region”. As the voltage is low, the ionized gas molecules recombine. When the voltage is increased further, the gas molecules ionize and stay in their ionized state without showing any increase in the count rate. This region is called “simple ionization region”. As the voltage is increased still further, the count rate increases proportionately with increase in voltage and hence this region is known as the “proprrtional region”. The counters based on the region are known as proportional counters.

          A further increase in voltage does not affect the count rate. At this threshold voltage, the rise in count rate begins to level off into plateau and is stable for about 300 volts length(the precise length depends on a particular tube). This region is known as “Geiger muller region” at which the Geiger muller counter is operated. Still higher voltages lead to a sudden sharp rise in the count rate. At this voltages the potential across electrodes is so high that spontaneous discharges occur in the tube which are not due to radioactivity. This region is known as “continuous discharge region”. The tube should never be operated at the continuous discharge region because the tube will get irreparably damaged.







SCINTILLATION COUNTING METHODS
Scintillation counting is based on the observation that certain chemical substances emit flashes of light on exposure of radiation. The measurement of these flashes of light is the basis of the method called scintillation counting. Depending upon the type of scintillator used for counting the radioactivity, they are classified into two types:
i.               solid scintillation counting
ii.             liquid scintillation counting



i.               Solid scintillation counting
Solid scintillation counter is ideal for gamma emitters. The counter consists of a large crystal of sodium iodide containing small amount of thallium iodide and an assembly of photomultiplier, preamplifier, a source of high voltage and a scaler encased in an aluminum casing. The radioactive sample is placed into a well shaped opening drilled into the crystal surface. The crystal absorbs much of the energy of the gamma rays which causes excitation of electrons of the atoms composing the crystal. The excited electrons rise to higher energy orbital. As these electrons return to normal level, the absorbed energy is discharged as flashes of light or scintillation.

The light (photons) is converted into electrical signals by the photomultiplier tube, amplified and is registered es counts by the scaler.

ii.             Liquid scintillation counting
Liquid scintillation counters are especially useful in measuring soft β emittors such as 3H, 35S and 14C, as these compounds cannot be measured efficiently using a G-M counter or a gamma counter.

A liquid scintillation counter consists of two photomultiplier tubes one on either side of a scintillation vial and enclosed in a light tight lead shield. The photomultiplier tubes are connected to a scaler through a high voltage power supply, a coincidence counting circuit and a pulse height analyzer.

The radioactive sample to be counted is mixed in a glass or plastic vial with “scintillation fluid”. The scintillation fluid contains three components:
i.               An organic solvent
ii.             A primary flour and
iii.           A secondary flour
The energy of the β particle is first transferred to the organic solvent which causes excitation of solvent molecules. When the excited solvent molecules returned to ground state, energy is transferred to the primary flour viz., 2,5 diphenyl oxazole (PPO) causing excitation of PPO. On returning to ground state, the primary flour emits photons in the UV region. The photocathodes of the photomultiplier tube are not sensitive enough to capture these photons. Hence a secondary flour viz., 1,4 bis (5-phenyloxazole-2)benzene (POPOP), is used to absorb the energy from the primary flour and reemit it as light of longer wavelength, which is close to the maximum sensitivity region of the photomultiplier tube. The size of the electrical pulse produced by the photomultiplier tube is proportional to the energy of β-particle absorbed by the scintillation fluid. The sequence of transfer of radiation energy from the radioactive material.

Liquid scintillation counters are ideal for low energy β-emitters e.g. 3H, 35S, 14C, 32P, etc. These counters can also be used for counting dual or triple labeled samples.

Composition of Scintillation fluid

The scintillation fluid contains 0.5% PPO and 0.01% POPOP in Analar scintillation grade toluene. The fluid (̴ 10 ml) is used per vial for counting. The radioactive samples to be counted are usually spotted (1-50 µl) on Whatman No.3 discs and are dried in a hot air oven or under infrared lamp. Then these discs are placed inside the vials containing the scintillation fluid and counted. The radioactive samples in small volume 1-5 µl can also be counted, by directly pipetting the volume inside the scintillation fluid. Large volumes cannot be counted directly because water quenches the counting. Hence larger volumes (upto 100 µl) can be spotted on Whatman No.3 discs, dried and then counted.



Cerenkov counting
Radioactive isotopes which produce β-particles with >265 KeV can be counted directly in liquid scintillation counter without the help of scintillation fluid. Modern photomultipliers accept about one third of the light energy emitted by these isotopes and is known as cerenkov radiation.

Background radiation
In liquid scintillation counting, even in the absence of any radioactive material added to the vials, some counts are always registered by the counter (̴ 50 counts). This is known as background counts. The background counts are derived from a number of sources such as
i.               Low aptitude signals arising spontaneously within the photomultiplier tubes.
ii.             Naturally occuring radio isotopes in the vial and in the scintillation fluid the organic solvents may contain small amounts of 3H and 14C.
iii.           Due to cosmic radiations.

Advantages of scintillation counting
§    The rapidity of fluorescence decay (10-9 s), which when compared to dead time in a Geiger-Muller tube (10-4 s), means much more count rates are possible.
§    Much higher counting efficiencies particularly for low energy β emitters; over 50% efficiency is routine in scintillation counting and efficiency can rise to over 90% for high energy emitters. This is partly due to the fact that the negatrons do not travel through air or pass through an end window of a Geiger-Muller tube but interact directly with the flour; energy loss before the event that is counted is therefore minimal.
§    The ability to accommodate samples of any type, including liquids, solids, suspensions and gels.
§    The ability to count separately different isotopes in the same sample, which means dual labeling experiments, can be carried out.
§    Scintillation counters are highly automated, hundreds of samples can be counted automatically and built in computer facilities carry out many forms of data analysis, such as efficiency correction, graph plotting, radioimmunoassay calculations, etc.


Disadvantages of scintillation counting
·                The cost per sample of scintillation counting is not insignificant; however, other factors including versatility, sensitivity, ease and accuracy outweigh this factor for most applications.
·                The greatest disadvantage of scintillation counting is quenching. This occurs when the energy transfer process. It can be any one of three kinds.
Ø   Optical quenching
Ø   Colour quenching
Ø   Chemical quenching

Optical quenching
This occurs if inappropriate or dirty scintillation vials are used. These will absorb some of the light being emitted, before it reaches the photomultiplier.


Colour quenching
This occurs if the sample is coloured and results in light emitted being absorbed within the scintillation cocktail before it leaves the sample vial. When colour quenching is known to be a major problem, it can be reduced, as outlined later.

Chemical quenching
It occurs when anything in the sample interferes with the transfer of energy from the solvent to the primary flour or from the secondary flour, is the most difficult form of quenching to accommodate. In a series of homogenous samples, chemical quenching may not vary greatly from sample to sample. In this case relative counting using sample counts per minute can be compared directly. However in the majority of biological experiments using radioisotopes, such homogeneity of samples is unlikely and is not sufficiently accurate to use relative counting. Instead an appropriate method of standardization must be used. This requires the determination of the counting efficiency of each sample and the conversion of counts per minute to absolute counts. It should be noted that quenching is not such a great problem in solid scintillation counting.

Chemiluminescence: This can also cause problems during liquid scintillation counting. It results from chemical reactions between components of the samples to be counted and the scintillation cocktail, and produces light emission unrelated to excitation of the solvent and flour system by radioactivity. These light emissions are generally low energy events and are rejected by the threshold setting of the photomultiplier in the same way as is photomultiplier noise.

Phospholuminescence : This results from components of the sample, including the vial itself, absorbing light and re-emitting it. Unlike chemiuminescence, which is a once only effect, phospholuminescence will occur on each exposure of a sample to light. Samples that are pigmented are most likely to phosphoresce. If this is a problem, samples should be adapted to dark prior to counting and the sample holder should be kept closed through the counting process.


AUTORADIOGRAPHY
          Ionizing radiation acts upon a photographic emulsion to produce a latent image much as does visible light. For an autoradiograph, a radiation source, (i.e. radioactivity) emanating from within the material to be imaged (the object) is required, along with a sensitive emulsion. Autoradiography is very sensitive and has been used in a wide variety of biological experiments.  These unusually involve a requirement to locate the distribution of radioactivity in biological specimens of different types. For instance, the sites of location of a radiolabelled drug throughout the body of an experimental animal. The techniques of autoradiography have become more important with recent development in molecular biology. In general, weak β-emitting isotopes (e.g. 3H, 14C and 35S) are most suitable for cell and tissue localization experiments.



Choice of emulsion and film
A variety of emulsion is available with different packing densities of the silver halide crystals. Care must be taken to choose an emulsion suitable for the purposes of the experiment, since the sensitivity of the emulsion will affect the resolution obtained.  X-ray film is generally suitable for macroscopic samples. Liquid emulsions are prepared by melting strips of emulsion by heating them to around 60°C. Then either the emulsion is poured onto the sample or the sample attached to a support is dipped into the emulsion. The emulsion is then allowed to set before being dried. Such a method is often referred to as a dipping film method and is preferred when very thin films are required.

Background
Accidental exposure to light, chemicals in the sample, natural background radioactivity (particularly 40K in glass) and even pressure applied during handling and storage of film will cause a background fog (i.e. latent image) on the developed film. This can be problematic, particularly in high resolution work and care must be taken at all times to minimize its effect. Background will always increase during exposure time, which should therefore always be kept to a minimum.

Time of exposure and film processing
The time of exposure depends upon the isotope, sample type, level of activity, film type and purpose of the experiment. The sample applies to the processing of the film in order to display the image. Generally the process must be adapted to a given purpose, and a great deal of trial and error is often involved in arriving at the most suitable procedures.

Direct autoradiography
In direct autoradiography, the X-ray film or emulsion is placed as close as possible to the sample and exposed at any convenient temperature. Quantitative images are produced until saturation is reached. The approach provides high resolution but limited sensitivity.

Intensifying screens
When 32P-labelled or γ-isotope-labelled samples, [e.g. (32P) DNA or 125I labelled protein fractions in gels] are to be located, the opposite problem to that presented by low energy isotopes prevails. These much more penetrating particles and rays cause little reaction with the film as they penetrate right through it, producing a poor image. The image can be greatly improved by placing, on the other side of the film from the sample, thick intensifying screen consisting of the solid phosphor.

Preflashing
The response of a photographic emulsion to radiation is not linear and usually involves a slow initial phase (lag) followed by a linear phase. Sensitivity of films may be increased by preflashing. This involves a millisecond light flash prior to the sample being brought into juxtaposition with the film and is often used where high sensitivity is required or if results are to be quantified.



Quantification
Autoradiography is usually used to locate rather than to quantify radioactivity. However, it is possible to obtain quantitative data directly from autoradiography by using a densitometer, which records the intensity of the image. This in turn is related to the amount of radioactivity in the original sample. There are many varieties of densitometers available and the choice made will depend on the purpose of the experiment.




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SPECTROSCOPY

SPECTROSCOPY
Spectroscopy is the branch of science dealing with the study of interaction of electromagnetic radiation with matter. Due to such interaction is that energy is absorbed or emitted by matter in discrete amounts called quanta. 

Electromagnetic radiation:
          Light or electromagnetic radiation is a form of energy that is transmitted through space at a constant velocity of 3 × 108 ms-1. The term electromagnetic radiation is made up of an electrical and a magnetic wave.

Wave theory of electromagnetic radiation:
          According to this theory, the electromagnetic radiations travel in the form of waves. This wave motion consists of oscillating electric and magnetic fields directed perpendicular to each other and perpendicular to the direction of propagation of the wave.

          The points X, Y, P and Q on the wave represent the maximum disturbances in the electrical field. The distance from the mean position is known as the amplitude of the wave. The distance from the crest X to crest Y is the wavelength λ.  The number of complete wavelength units passing through a given point per second is called frequency. These two quantities are related to each other, and given,

                                                       C
                                              V = -----                       -------------- (1)
                                                        λ
Where, c → velocity of the electromagnetic wave. Since c is constant (3 × 108 ms-1) for all types of electromagnetic radiations.  So the above relation may be expressed as,
                                                          1
                                              V α ---------                  ---------------- (2)
                                                          λ
Reciprocal of wavelength i.e., 1/ λ is called wave number, v. Hence equation 1 may be written as,
                                              V = cv                                     ----------------- (3)

          The wavelength is expressed in terms of centimeter (cm), metre (m), micron (μ) or micrometer (μm) or angstrom (A˚) units. The other commonly used unit is nanometer (nm) where 1 nm = 10-9.
          Frequency is measured as cycles per second (cps) called hertz (Hz) or kilocycles per second (kHz) or mega cycles per second (mHz).

          1 kHz = 103 Hz
          1 mHz = 106 Hz  or cps

          The wave number is the number of waves per unit distance and is expressed in the units of cm-1 called Kaysers (K). Sometimes kilokayser (kK) is also used.
          1 kK = 1000 K = 1000 cm-1.


Quantum theory of electromagnetic radiation:
          The quantum theory describes the electromagnetic radiation as one consisting of a stream of energy packets called photons or quanta, which travel in the direction of propagation of the beam with the velocity of light. The energy E of photon is proportional to the frequency of radiation and is given by the equation,
                                  E = hv             -------------------- (4)
Where,
          h → Planck’s constant (6.6.25 ×10-27 erg/second)
          By substituting c/ λ, for v as expressed in equation 1, equation 4 can be alternatively expressed as,
                                  E = hv = hc/ λ
          By substituting cv for v as expressed in equation 3, equation 4 can be alternatively expressed as,
                                  E = hcv

TYPES OF SPECTROSCOPY:
Absorption of photons by the molecules may change its internal energy (electronic, vibrational or rotational energy) or may cause transitions between different spin orientations of nuclei in the magnetic field. Almost all parts of the electromagnetic spectra are used for the studying matter; the following types of spectroscopy are in common use,

1.                         Colorimetry
2.                         Ultraviolet and visible spectroscopy (uv – vis)
3.                         Flame photometry
4.                         Raman spectroscopy
5.                         Infrared spectroscopy
6.                         Atomic spectroscopy
7.                         Mass spectroscopy
8.                         Nuclear magnetic resonance (NMR) spectroscopy
9.                         X – ray spectroscopy
10.                      Fluorimeter
11.                     Electronic Spin Resonance (ESR)


UV – VISIBLE SPECTROSCOPY
Ultraviolet-visible spectroscopy or ultraviolet-visible spectrophotometry (UV-Vis or UV/Vis) involves the spectroscopy of photons in the UV-visible region. This means it uses light in the visible and adjacent (near ultraviolet (UV) and near infrared (NIR)) ranges. The absorption in the visible ranges directly affects the color of the chemicals involved.


Principle:
This instrument works based on the principle of Beer - Lambert’s Law. This is also known as Beer’s Law or Lambert’s Law. Two basic laws proposed by Beer and Lambert explain the absorption of light by a substance in solution.

Beer’s Law states that “when a parallel beam of monochromatic light passes through a light absorbing medium, the amount of light that is absorbed is directly proportional to the number of light  absorbing molecules in that medium (in other words, the concentration of the substance in that medium).
i.e.,    A α C
where, A→ the absorbance or optical density
          C → the concentration of the light absorbing substance in the medium.

          Lambert’s Law states that “when a parallel beam of monochromatic light passes through a light absorbing medium, the amount of light absorbed is directly proportional to the length of the medium through which the light passes.
i.e.,    A α L
where,           A→ the absorbance
                      L → the length of the medium
          Since the measurement of light absorption depends on both the laws, it is popularly known as Beer – Lambert’s Law.
          Thus,               A α C× L
                                  A = e CL                                          
Where e is known as the extinction co-efficient.
                      A = log   Ii / It
                      A = log 100 / T
                          = log 100 – log T
                          = 2 – log T
Where,
          Ii → intensity of the incident light
          It → intensity of the transmitted light
          T → transmittance

Instrumentation:
The instrument used in ultraviolet-visible spectroscopy is called a UV/Vis spectrophotometer. It measures the intensity of light passing through a sample (I), and compares it to the intensity of light before it passes through the sample (Io). The ratio I / Io are called the transmittance, and are usually expressed as a percentage (%T). The absorbance, A, is based on the transmittance:
A = − log (%T / 100%)

Parts of a spectrophotometer:
·                A light source,
·                A monochromator
·                Transparent vessel
·                A photosensitive detector
·                Amplifier & recorder

1. Light source:
Most commonly used sources of ultraviolet radiation are the hydrogen lamp and the dueterium lamp. Both the systems consist of a pair of electrodes enclosed in a glass tube provided with a quartz window. The glass tube is filled with hydrogen or deuterium gas at low pressure. When a stabilized voltage is applied they emit radiation in UV region. Xenon lamp is also used but the emission of light is not stable as hydrogen lamp.

2. Wavelength selectors:
The light from the source is composed of a wide range of wavelengths. This light is called polychromatic or heterochromatic. The polychromatic light reflected back using a plane mirror, passes through an entrance slit and through a condensing lens and falls onto a monochromator. The monochromator disperses the light and the desired wavelength is focuses on the exit slit using the wavelength selectors.
          The Wavelength selectors are of two types. They are filters and monochromators.

i) Filter:
Filters operate by absorbing light in all other regions except for one, which they reflect. Gelatin filters are made of a layer of gelatin. Colored with organic dyes and sealed between glass plates. Most modern filter instruments use tinted glass filters. They are capable of transmitting light over a limited portion of the spectrum only.

ii) Monochromators:
A monochromators resolves the polychromatic radiation into its individual wavelengths and isolates these wavelengths into very narrow bands. The essential components of a monochromator are,
·                An entrance slit → which admits polychromatic light from the source
·                A collimating device such as lens or a mirrorcollimates the polychromatic light on to the dispersion device.
·                A wavelength resolving device like a prism or a grating → which breaks the radiation  into component wavelengths.
·                 
·                A focusing lens or mirror
·                Exit slit → which allows the monochromatic beam to escape.
          The entire assembly is mounted in a light tight box.
The effective band width of the light emerging from the monochromator depends mostly upon the dispersing element (prism or grating) and the slit widths of the both the entrance and the exit slits.

Prism:
A prism disperses polychromatic light form the source into its constituent wavelengths to a different extent.  The shorter wavelengths are diffracted most. The degree of dispersion by the prism depends upon,
·                The apical angle of the prism (usually 60°)
·                The material of which it is made.
Two types of prisms, namely 60° Cornu quartz prism and 30° Littrow prism are usually employed in commercial instruments. For ultra violet region fused silica or quartz prism are used.

Grating:
Gratings are often used in the monochromators of spectrophotometers operating in UV, visible and IR. They possess a highly aluminized surface with a large number of parallel grooves which are equally spaced. These grooves are also known as Lines. A grating may have between 600 to 2000 lines per mm.
          Very often, the monochromator consists of both the prism and grating. The prism placed before the grating is known as foreprism.

Single beam spectrophotometer:
The monochromator disperses the light into its component wavelengths. Using the wavelength selector, the desired wavelength is selected. Now the selected beam of monochromatic light passes again through a lens to a light tight compartment where the sample, the transmitted light falls on a photomultiplier tube (PMT). The PMT converts the light energy into electrical energy, which is amplified, measured and recorded on the analog/digital read out.


Double – beam spectrophotometer:
In Double – beam spectrophotometers, the monochromatic light coming out form the lens is split into two halves by placing a half silvered mirror (HSM) on its path. Now 50% of the light passes directly through the mirror and falls on the reference cuvette and 50% of the light reflected onto a second silvered mirror and then allowed to fall on the sample cuvette. At any given time, the intensities of the transmitted light from the reference and sample cuvettes are measured, amplified, the difference in intensities computed and sent to the read out.
Cuvettes:
The optically transparent cells (cuvette) are made up of glass, plastic, silica or quartz. Glass and plastic absorb UV light below 310 nm. Hence they cannot be used for light measurements in UV region. Silica and quartz do not absorb UV light and hence they are used for both UV and visible light measurements. Since quartz absorbs light below 190 nm, cuvettes of lithium fluoride can be used which transmit radiation down to 110 nm. Oxygen also absorbs light at wavelengths less than 200 nm. The standard cuvettes are made up of quartz, have an optical path of 1 cm and hold a volume of 1-3 ml. The rectangular shaped cells are widely used.

Detection devices:
Most detectors depend on the photoelectric effect, where the incident light (photon) liberates electrons from a metal or other material surface. Some external circuits collects the electrons and measures their number as current. The current is then proportional to the light intensity and measure it. The detectors include,
a)                                     High sensitivity to detect the low levels of radiant energy
b)                                     Short response time
c)                                     Long term stability
d)                                    An electronic signal to amplify.
There are 3 basic kinds of detectors in UV region. They are photocells, phototubes and photomultiplier tubes.

1. Photovoltaic or barrier layer cells:
It employs semiconductor materials. They are crystalline and a number of materials are used in photocells (cadmium sulphide, silicon and selenium). Selenium based photocells are most common. Photocells have a long life and are inexpensive and reliable.

2. Phototubes or photo emissive tubes:
The components of a phototube includes,
·                An evacuated glass envelope with a quartz window
·                A semi cylindrical cathode (inner surface is coated with alkali )
·                A centrally located metal wire anode.
 The quartz window allows the passage of radiation which strikes the photo emissive surface of the cathode. The energy of the photon is transferred to the loosely bound electrons of the cathode surface. The electrons become excited and finally leave the surface and travel towards the anode causing current to flow in the circuit. If the electron collection is 100% efficient, the phototube current should be proportional to the light intensity. This current is amplified electronically and measured.
            
3) Photomultiplier tube:
These detectors are designed to amplify the initial photoelectric effect and are suitable for use at very low light intensities. A photomultiplier consists of,
a)             an evacuated glass tube which is sealed the cathode and the anode
b)             additional intervening electrode – Dynodes

This photomultiplier tube has a cathode with photo emissive surface (a selenium layer) and a wire anode. In addition to the photo emissive cathode, it also contains a circular array of nine additional cathodes called dynodes.
The electrons emitted from the photosensitive cathode strike dynode 1, which emit several additional electrons. The electrons are accelerated towards dynode 2, which again emit several electrons. The amplified electrons flow to the anode generating a much larger photoelectric current than in a photocell.

General Procedure:
§    When the sample kept in the sample cell, the light source is passed through the silvered mirror.
§    The reflected light from the mirror passes through an entrance slit and a condensing lens.
§    The lens renders the light rays into parallel beams and the parallel beams of light now fall on a monochromator.
§    The monochromator disperses the light into its component wavelengths.
§    By using the wavelength selector, the desired wavelength is selected.
§    Now the selected beam of monochromatic light passes again through a lens to a light-tight compartment where the sample is kept in a cuvette.
§    After passing through the sample, the transmitted light falls on a photomultiplier tube (PMT).
§    The PMT converts the light energy into electrical energy, which is amplified, measured and recorded on the analog/digital read out.

Applications:
UV – Vis spectrophotometer is a more refined instrument and it gives a far better precision and resolution than a colorimeter. It has a wide range of applications in biological research.

Qualitative analysis: This technique may be used to identify the biological compounds in both               the pure state and in biological preparation. This is done by plotting the absorption spectrum curves.

Quantitative analysis: to determine the unknown concentration of a given species by absorption spectrometry. By using the known concentration of a sample, one can calculate the concentration of an unknown sample.

Enzyme assay: The quantitative assay of enzyme activity is carried out most quickly and conveniently.

Molecular weight determination: This is a very reliable method to determine the molecular weight of a particular compound.

To study the Cis-Trans isomerism: The compound in Cis form will have a particular absorption spectra and same for the trans form compounds. But the trans isomer is usually more elongated than its cis counterpart. It is usual therefore for the trans isomer have a higher wavelength of maximum absorption.

To study the physiochemical characters: it has been used to study such physiochemical phenomena as heat formation by the addition of compounds, assosciation of constants of weak acids and bases in organic solvents, protein dye interactions, chlorophyll protein complexes etc.

Control of purification: This is one of the most important uses of this technique. Impurities in a compound can be detected very easily by this method. For E.g. carbon disulfide impurity in carbon tetra chloride can be detected easily by measuring absorbance at 318 nm where carbon disulfide absorbs.

It is used to estimate the concentration of both colored as well as colorless solutions.
Even very small volume of sample can be used for estimation of precious sample.
It usually does not degrade or modify the materials studied and hence the materials can be recovered and reused.
It is also used to find out the absorption maxima of compounds with a wide range of wavelengths.
It is also used to measure the growth of bacteria and yeasts and to determine the number of cells in a culture.






COLORIMETER

A Colorimeter is a device used in Colorimetry. In scientific fields the word generally refers to the device that measures the absorbance of particular wavelengths of light by a specific solution. This device is most commonly used to determine the concentration of a known solute in a given solution by the application of the Beer-Lambert law, (which states that the concentration of a solute is proportional to the absorbance).

Colorimetry:
                      Colorimetry is a form of photometry which deals with measurement of light absorption by colored substances in solutions. The instrument which measures the intensity of the color is known as colorimeter.

Principle:
This is based on the principle that when a beam of incident light passes through a colored solution, the colored substances in the solution absorb a part of light and hence the amount of the transmitted light (the light comes out) is always less than that of the incident light. As the number of light absorbing molecules increases, the intensity of light coming out of the medium decreases exponentially and vice versa. The difference in intensities between the incident and transmitted light, in turn reflects the number of absorbing molecules or in other words, the concentration of the absorbing molecules in that solution.

Beer – Lambert’s Law:
This instrument works based on the principle of Beer - Lambert’s Law. This is also known as Beer’s Law or Lambert’s Law. Two basic laws proposed by Beer and Lambert explain the absorption of light by a substance in solution.

Beer’s Law states that “when a parallel beam of monochromatic light passes through a light absorbing medium, the amount of light that is absorbed is directly proportional to the number of light  absorbing molecules in that medium (in other words, the concentration of the substance in that medium).

i.e.,    A α C
where,
          A→ the absorbance or optical density
          C → the concentration of the light absorbing substance in the medium.

          Lambert’s Law states that “when a parallel beam of monochromatic light passes through a light absorbing medium, the amount of light absorbed is directly proportional to the length of the medium through which the light passes.
i.e.,    A α L
where,           A→ the absorbance
          L → the length of the medium
          Since the measurement of light absorption depends on both the laws, it is popularly known as Beer – Lambert’s Law.
          Thus,               A α C× L
                                  A = e CL
Where e is known as the extinction co-efficient.
                      A = log Ii/It    
                      A = log 100/T
                          = log 100 – log T
                          = 2 – log T
Where,
          Ii → intensity of the incident light
          It → intensity of the transmitted light
          T → transmittance

Molar Extinction Coefficient:
          In the above equation, when concentration is 1 M, i.e., one mole per litre and path length of light is 1 cm, and then e is known as Molar Extinction Coefficient (∑M). (∑M is constant for a particular compound at particular wavelength and has a maximal value when the compound is in its purest state).

Deviation of Beer – Lambert’s Law:
§    In case of high sample concentration the molecules may dimerize.
§    If the spectra differ the absorption coefficient will also change, which leads to a positive or negative deviation.
§    The temperature of the sample also affects the result.
§    Sample instability also leads to variations in result.
§    Some solutes may fluoresce. For such kind of samples a considerable deviation will occur.
§    Turbidity solution always ends up giving higher absorbance than the actual absorbance.
§    Thus the Beer – Lambert’s Law has many deviations.

Instrumentation:
                                          
Parts of a colorimeter:
·       A light source
·       A condensing lens
·       A filter
·       A sample holder (cuvette)
·       A photo cell
·       A galvanometer

1. Light source:
·                The light is an ordinary low-voltage filament lamp or a tungsten lamp (wave length between 400 and 900 nm).
·                It is inexpensive and emits continuous radiation in the region between 350 and 2500 nm.
·                Carbon arc is commercially used light source which provides more intense visible radiation.

2. Wave length selectors:
          Wavelength selectors are of two types. They are filters and monochromators.
i) Filter:
          Filters operate by absorbing light in all other regions except for one, which they reflect. Gelatin filters are made of a layer of gelatin. Colored with organic dyes and sealed between glass plates. Most modern filter instruments use tinted glass filters. They are capable of transmitting light over a limited portion of the spectrum only.
          Incase of colorimeter the instrument is provided with a set of replaceable filters marked “V, B, G, Y, O, and R”.

 Instead of the above mark a number may be written on each, which indicates the wavelength of light that the filter transmits. The filter is not removable and they are fixed on to a disc, which can only be rotated to bring the appropriate filter in the light path. Filters are limited specificity i.e., it is designed to transmit 540 nm may actually transmit light between 520 and 560 nm with a peak transmittance at 540 nm.


                                              Visible Spectrum
Colour of the
Solution
Range of wavelength
Complementary of
Subtraction color
Violet
400 – 465
Greenish yellow
Blue
465 – 482
Yellow
Green
498 – 530
Red purple (magenta)
Yellow
576 – 580
Blue
Orange
587 – 610
Greenish blue
Red
617 – 660
Bluish green
Purple red
670 – 720
green

ii) Monochromators:
                      A monochromators resolves the polychromatic radiation into its individual wavelengths and isolates these wavelengths into very narrow bands. The essential components of a monochromator are,
·                An entrance slit → which admits polychromatic light from the source
·                A collimating device such as lens or a mirrorcollimates the polychromatic light on       to the dispersion device.
·                A wavelength resolving device like a prism or a grating → which breaks the radiation   into component wavelengths.
·                A focusing lens or mirror
·                Exit slit → which allows the monochromatic beam to escape.
·                The entire assembly is mounted in a light tight box.

3) Sample holder:
§    Samples are taken in a small sample holder called Cuvette. A round glass cells are used.
§    The standard path length is 1 cm. However cuvettes of path length of 1mm to 10 mm are available for special cases.
§    They are usually made up of either ordinary glass or quartz.
§    The surface of the cuvettes must be kept clean.
§    There should not any finger prints or traces of previous samples. Because it may interfere the optical length and causes errors.
§    Rinsing with water is sufficient for normal cuvettes. If the dirt is abnormally tenacious, sulfonic detergents or nitric acid may be used.

4. Detection devices:
Most detectors depend on the photoelectric effect, where incident light liberates electrons from a metal or other material surface. Some devices convert the transmitted light energy into electrical energy. This is amplified and measured by the Galvanometer. The Galvanometer is calibrated to read the absorbance/transmittance directly.
It is necessary to standardize the instrument or set it at zero using the blank, change cuvettes and read the absorbance.


General procedure:
§  The light from a tungsten lamp passes through a slit.
§  The sample should be in room temperature and the cuvette should be clean. Before and after                                                   keeping the cuvette in the holder it should be wiped thoroughly.
§  There should not very low amount of sample and also it should not overflow.
§  Before keeping the sample the optical density (O.D) must be set up with a blank as zero.
§  A condensing lens and a filter emerge as a parallel beam of monochromatic light.
§  The monochromatic light passes through the sample solution.
§  And the transmitted light falls on the photocell.
§  The photocell converts the transmitted light energy into electrical energy, which is amplified and measured by the galvanometer.
§  The optical density will appear in the output device, and based on the standard the concentration of the unknown can be calculated.



Applications:
§    Colorimetry has perhaps the widest application in biological sciences.
§    The concentration of any unknown substance can be determined using a colorimeter.
§    If the substance by itself is colorless it can be chemically converted to a colored substance (stoichiometrically by adding a chromophoric group), and the concentration measured.
§    By comparing the standard curve the concentration of unknown can be calculated.
§    Thus colorimeter plays an important role in the biological field.



FLUORESCENCE SPECTROSCOPY
Introduction
Molecular fluorescence is the optical emission from molecules that have been excited to higher energy levels by absorption of electromagnetic radiation. The main advantage of fluorescence detection compared to absorption measurements is the greater sensitivity achievable because the fluorescence signal has in principle a zero background. Analytical applications include quantitative measurements of molecules in solution and fluorescence detection in liquid chromatography.

Basic Design
As stated in the introduction, the purpose of a spectrophotometer is to chracterise how molecules react with photons of varying wavelengths. This easiest way to do this is to design an instrument that can control what type of light is in contact with the sample and the amount of that light that makes it through. Shown below is a simple spectrophotometer that does just what was described. A light source produces light that can be separated and controlled by the monochrometer which then allows only the desired light to impinge upon the sample. The light that travels through the sample is detected and sent to a recorder. Keep this overall picture in mind when thinking about the components and what each of their parts are in whole experiment.







Sources
The first piece of equipment needed is a source of photons (light). Since we are interested in the UV-Vis region of the electromagnetic spectrum, we need to assure that this source is able to produce photons with the correct wavelengths (180-780 nm) that are characteristic to the spectrums of interest so that the experiment can be completed. Typical sources come in two forms, either in the form of a lamp, or in the form of a laser. Lamps can provide a wide spectrum of light that can be used for almost any purpose at a very reasonable cost, while lasers provide very intense monochromatic light and tend can be used for fluorescence and other specialized experiments due to their high costs.


Filters and Monochrometers
Unless a laser is used, a device is needed to restrict and isolate the wavelengths that our sources provide in order to control the experiment. If a isolated wavelength is needed or isn't needed, interference or absorption filters can be used. If a spectrum of wavelengths needs to be passed through the sample, monochrometers provide the ability to separate and control the light passed through the sample while preserving the available spectrum.

Filters
Intereference filters are designed to provide constructive or destructive interference of light by taking advantage of the refraction of light through different materials. As light passes from one medium to the other the direction and wavelength of light can be changed based on the index of refraction of both mediums involved and the angle of the incident and exiting light. Due to this behavior, constructive and destructive interference can be controlled by varying the thickness (d) of a transparent dielectric material between two semi-reflective sheets and the angle the light is shined upon the surface. As light hits the first semi-reflective sheet, a portion is reflected, while the rest travels through the dielectric to be bent and reflected by the second semi-reflective sheet. If the conditions are correct, the reflected light and the initial incident light will be in phase and constructive interference occurs for only a particular wavelength.
                                                                                                                                                                                                            
Absorption filters work on the premise of being able to filter light by absorbing all other wavelengths that aren't of interest. They are normally constructed from a colored glass that absorbs over a wide range. Although normally cheaper than interference filters, absorbance filters tend to be less precise at filtering for a selected wavelength and also have the added penalty of absorbing some of the selected light thus lowering the intensity.

 
Monochrometers
Monochrometers are used to control and separate light so that a sample can be subjected to a span of wavelengths.  Light entering a monochrometer is filtered by a thin slit. The filtered light is then focused by a mirror  onto a dispersing element that separates the light into its different wavelengths. The separated light is then focused again and angled toward an exit slit which then filters against all wavelengths except the desired one. The wavelength selected can then easily be changed by rotating the dispersing element to support the transmission of the new desired wavelength. Though monochrometers nearly all have the same practical design, the difference normally is determined by the type of dispersing element.
One type of dispersing element is a prism which disperses light by refraction through two angled surfaces. In order to separate the light into different wavelengths, the prism needs to be made of material that has a change in the index of refraction with respect to wavelength so that each wavelength is bent at a different angle. The larger the difference in the index of refraction the better the separation is between wavelengths.  For the UV-Vis range, a typical prism is cut from left handed quartz at a thirty degree angle and attached to another piece of quarts cut the same way except from right handed quartz to make a Conru Prism.  The pitfall of prism based  dispersing elements is the fact that the index of refraction for most materials varies nonlinearly when compared to wavelength which results in a smaller degree of separation at longer wavelengths.
 
More commonly used due to less expensive fabrication costs and its ability to separate light in a linear fashion are grating dispersing elements. Gratings are designed to diffract light which is a separation based on the angle of the incident light to the grating normal and the spacing between groves. When beams of light impinge upon the grating some beams travel farther than others and this causes an effect akin to a interference filter which allows for constructive and destructive interference and provides the means to reflect a specific wavelength based on the angle of incidence. The most common type of grating is the echellette grating in which the grooves are angled in order to provide maximum reflection of the incident light into a single order of reflected light.
Sample Cell
Care must be taken when considering a sample container to avoid unwanted absorption in the range of interest. While glass might be perfect for the visible range, it absorbs in the UV range. Quartz can be used for both but most likely would cost considerably more. Disposable Plastic cuvettes created from polystyrene or polymethyl methacrylate are in common use today as they are cheap to purchase and eliminate the need for cleaning cuvettes in order to analyze multiple samples. The shape of the sample holder is also very important as unwanted scattering of light should be minimized and pathlength through the cell should remain constant. Square (1 cm) cuvettes with frosted sides have been designed to minimize scattering and provide a surface to hold the cuvette, thereby reducing smudges or smears of the optical window all the while keeping a fixed path length. Cuvettes for fluorescent experiments cannot allow the frosted sides due to the 90° angle of most instruments and have to be carefully cleaned as bodily oils have the ability to fluoresce. Placement of the sample within either a absorption or fluorescence device is imperative and is normally fixed by a sample holder to insure reproducible results.

Detectors
After the light has passed through the sample, we want to be able to detect and measure the resulting light. These types of detectors come in the form of transducers that are able to take energy from light and convert it into an electrical signal that can be recorded, and if necessary, amplified. Photomultiplier tubes are a common example of a transducer that is used in a variety of devices. The idea is that when a photon hits the top of the tube electrons are released, which are pulled toward the other end of the tube by an electric field. The way the electrons are multiplied is due to the fact that along the length of the tube there are several dynodes that have a slightly less negative potential than surface before it which causes the electrons traveling down the tube to hit each surface which then in turn produces more electrons until at the very end there is a large amount of electrons (~1,000,000) representing the one photon that started the cascade.
 

Charge injection device (CID)
This device works by having a p-type and n-type semiconductor next to each other in which the n-type material is separated from the anodes by a silica layer that acts as a capacitor. As a photon interacts with the n-type layer, an electron migrates to the p-type semiconductor and a positive charge is generated that migrates toward the silica capacitor. This process continues to happen until the potential is measured by means of comparing the more negative of the anodes to ground (Vi) . The charge is then transferred to the other anode and measured (Vf). The difference between Vf and Vi is directly proportional to the amount of photons that collided with the n-type layer. The positive charges are then repelled when the anodes switch momentarily to having a positive charge and then the cycle can be repeated. Thousands of these little detectors can be aligned and used to describe the light that interacts with it and can rival the performance of the photomultiplier tube.
 




Instrumental Designs
Single Beam Spectrometer
This device can measure the transmittance or absorbance of a particular analyte at a given wavelength provided by the source and monochrometer. Background subtraction in these machines needs to be done separately before the analyte is inserted and can be stored and subtracted by the signal processor attached.
 

For fluorescence spectroscopy the equivalent to a single beam spectrometer has a few slight modifications in that the detector is perpendicular to the source, and that there is an additional monochrometer that can be used to vary the wavelength detected. In this fashion, the source light is unable to interfere with the fluorescence light being measured, and the fluorescent light produced can be separated and described as the resulting wavelengths of fluorescence as a function of incident light.
 

Double Beam Spectrometer
A double beam spectrometer takes a more analytical approach to the design. Because of fluctuations in the source intensity and inconsistantcies in the transducer, the source light is split into two beams, one which travels through the sample, and another that is sent through a blank or standard solution. Both beams are then read by separate transducers and the difference between the two is recorded as the corrected transmittance. This allows for quick screening of analytes and negates the need for two separate scans to complete a background subtraction. The same idea can be applied to a fluorometer as well to obtain the same benefit.



The latest instrument designs use a multichannel detector, such as an array of CID's, that allow for the spectrum of an analyte to be gathered in seconds due to the fact that the light transmitted through the sample can be split and a spectrum of wavelengths can be monitored simultaniously instead of individually. Also fiber optic cables can be used to transfer the light from the source to the sample or from the sample to the dispersion grating and negate the need to consider the slit when thinking about resolution.

Applications
§    Fluorescence spectroscopy is used in biochemical, medical and chemical research fields for analyzing organic compounds. There has also been a report of its use in differentiating malignant, bashful skin tumors from benign.
§    Atomic Fluorescence Spectroscopy (AFS) techniques are useful in other kinds of analysis or measurement of a compound present in air, water, or other media.
§    Fluorescence can also be used to redirect photons.
§    Fluorescence spectroscopy can be adapted to the microscopic level using microflurimetry.
§    In analytical chemistry, fluorescence detectors are used with HPLC.


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